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Latest Articles

  • Representative Diatom and Coccolithophore Species Exhibit Divergent Responses throughout Simulated Upwelling Cycles
    Research Article
    Representative Diatom and Coccolithophore Species Exhibit Divergent Responses throughout Simulated Upwelling Cycles

    Coastal upwelling regions are among the most biologically productive ecosystems. During upwelling events, nutrient-rich water is delivered from depth resulting in intense phytoplankton blooms typically dominated by diatoms.

    Robert H. Lampe, Gustavo Hernandez, Yuan Yu Lin, Adrian Marchetti
    30 Mar 2021
  • Global Transcriptional Regulators Fine-Tune the Translational and Metabolic Efficiency for Optimal Growth of <span class="named-content genus-species" id="named-content-1">Escherichia coli</span>
    Research Article
    Global Transcriptional Regulators Fine-Tune the Translational and Metabolic Efficiency for Optimal Growth of Escherichia coli

    Cellular proteome allocation in response to environmental or internal perturbations governs their eventual phenotypic outcome. This entails striking an effective balance between amino acid biosynthesis by metabolic proteins and its consumption by ribosomes.

    Mahesh S. Iyer, Ankita Pal, Sumana Srinivasan, Pramod R. Somvanshi, K. V. Venkatesh
    30 Mar 2021
  • From Plants to Ants: Fungal Modification of Leaf Lipids for Nutrition and Communication in the Leaf-Cutter Ant Fungal Garden Ecosystem
    Research Article
    From Plants to Ants: Fungal Modification of Leaf Lipids for Nutrition and Communication in the Leaf-Cutter Ant Fungal Garden Ecosystem

    In this work, we examined the role of lipids in the mutualism between leaf-cutter ants and fungus. These ants cut fresh leaf material, which they provide to their fungal cultivar, that converts energy and nutrients from the plants and provides it to the ants in specialized hyphal swellings called gongylidia.

    Lily Khadempour, Jennifer E. Kyle, Bobbie-Jo M. Webb-Robertson, Carrie D. Nicora, Francesca B. Smith, Richard D. Smith, Mary S. Lipton, Cameron R. Currie, Erin S. Baker, Kristin E. Burnum-Johnson
    23 Mar 2021
  • GAUGE-Annotated Microbial Transcriptomic Data Facilitate Parallel Mining and High-Throughput Reanalysis To Form Data-Driven Hypotheses
    Research Article
    GAUGE-Annotated Microbial Transcriptomic Data Facilitate Parallel Mining and High-Throughput Reanalysis To Form Data-Driven Hypotheses

    GEO archives transcriptomic data from over 5,800 microbial experiments and allows researchers to answer questions not directly addressed in published papers. However, less than 4% of the microbial data sets include the sample group annotations required for high-throughput reanalysis.

    Zhongyou Li, Katja Koeppen, Victoria I. Holden, Samuel L. Neff, Liviu Cengher, Elora G. Demers, Dallas L. Mould, Bruce A. Stanton, Thomas H. Hampton
    23 Mar 2021
  • Fungal and Bacterial Loads: Noninvasive Inflammatory Bowel Disease Biomarkers for the Clinical Setting
    Research Article
    Fungal and Bacterial Loads: Noninvasive Inflammatory Bowel Disease Biomarkers for the Clinical Setting

    Next-generation sequence data analysis has allowed a better understanding of the pathophysiology of IBD, relating microbiome composition and functions to the disease. Microbiome composition profiling may provide efficient diagnosis and prognosis tools in IBD.

    G. Sarrabayrouse, A. Elias, F. Yáñez, L. Mayorga, E. Varela, C. Bartoli, F. Casellas, N. Borruel, C. Herrera de Guise, K. Machiels, S. Vermeire, C. Manichanh
    23 Mar 2021
  • Linking Bacterial-Fungal Relationships to Microbial Diversity and Soil Nutrient Cycling
    Research Article
    Linking Bacterial-Fungal Relationships to Microbial Diversity and Soil Nutrient Cycling

    The relationships between soil biodiversity and ecosystem functions are an important yet poorly understood topic in microbial ecology. This study presents an exploratory effort to gain predictive understanding of the factors driving the relationships between microbial diversity and potential soil nutrient cycling in complex terrestrial ecosystems.

    Shuo Jiao, Ziheng Peng, Jiejun Qi, Jiamin Gao, Gehong Wei
    23 Mar 2021
  • Engineering High-Yield Biopolymer Secretion Creates an Extracellular Protein Matrix for Living Materials
    Editor's Pick Research Article
    Engineering High-Yield Biopolymer Secretion Creates an Extracellular Protein Matrix for Living Materials

    Engineered living materials (ELM) aim to mimic characteristics of natural occurring systems, bringing the benefits of self-healing, synthesis, autonomous assembly, and responsiveness to traditional materials. Previous research has shown the potential of replicating the bacterial extracellular matrix (ECM) to mimic biofilms.

    Maria Teresa Orozco-Hidalgo, Marimikel Charrier, Nicholas Tjahjono, Robert F. Tesoriero, Jr., Dong Li, Sara Molinari, Kathleen R. Ryan, Paul D. Ashby, Behzad Rad, Caroline M. Ajo-Franklin
    23 Mar 2021
  • A Small Cysteine-Free Protein Acts as a Novel Regulator of Fungal Insect-Pathogenic Lifecycle and Genomic Expression
    Research Article
    A Small Cysteine-Free Protein Acts as a Novel Regulator of Fungal Insect-Pathogenic Lifecycle and Genomic Expression

    Small cysteine-rich proteins secreted during plant-pathogenic fungal infection comprise virulence effectors. Our study confirms that only a cysteine-free protein (CFP) is determinant to insect-pathogenic fungal virulence among 10 small putatively secreted proteins containing 0 to 12 Cys residues.

    Ya-Ni Mou, Bo Fu, Kang Ren, Sheng-Hua Ying, Ming-Guang Feng
    23 Mar 2021
  • Presence of Bromotyrosine Alkaloids in Marine Sponges Is Independent of Metabolomic and Microbiome Architectures
    Research Article
    Presence of Bromotyrosine Alkaloids in Marine Sponges Is Independent of Metabolomic and Microbiome Architectures

    Our work demonstrates that phylogenetically and geographically distant sponges with very different microbiomes can harbor natural product chemical classes that are united in their core chemical structures and biosynthetic logic. Furthermore, we show that independent of geographical dispersion, natural product chemistry, and microbial abundance, overall sponge metabolomes tightly correlate with their microbiomes.

    Ipsita Mohanty, Subhasish Tapadar, Samuel G. Moore, Jason S. Biggs, Christopher J. Freeman, David A. Gaul, Neha Garg, Vinayak Agarwal
    16 Mar 2021
  • Maternal Emulsifier P80 Intake Induces Gut Dysbiosis in Offspring and Increases Their Susceptibility to Colitis in Adulthood
    Research Article
    Maternal Emulsifier P80 Intake Induces Gut Dysbiosis in Offspring and Increases Their Susceptibility to Colitis in Adulthood

    The main findings of this research showed that maternal P80 intake could disrupt the intestinal barrier, induce gut dysbiosis, and promote colitis susceptibility in adulthood. This study will enhance understanding of the prevention of IBD.

    Ge Jin, Qiang Tang, Jiaheng Ma, Xiang Liu, Bingqian Zhou, Yue Sun, Xiaoqi Pang, Zixuan Guo, Runxiang Xie, Tianyu Liu, Bangmao Wang, Hailong Cao
    16 Mar 2021

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