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fermentation

  • Open Access
    Metabolic Feedback Inhibition Influences Metabolite Secretion by the Human Gut Symbiont <span class="named-content genus-species" id="named-content-1">Bacteroides thetaiotaomicron</span>
    Research Article | Novel Systems Biology Techniques
    Metabolic Feedback Inhibition Influences Metabolite Secretion by the Human Gut Symbiont Bacteroides thetaiotaomicron

    Bacteroides is a highly abundant taxon in the human gut, and Bacteroides thetaiotaomicron (B. theta) is a ubiquitous human symbiont that colonizes the host early in development and persists throughout its life span. The phenotypic plasticity of keystone organisms such as B. theta is important to understand in order to predict phenotype(s)...

    Jennie L. Catlett, Jonathan Catazaro, Mikaela Cashman, Sean Carr, Robert Powers, Myra B. Cohen, Nicole R. Buan
  • Open Access
    Comparative Analysis of Root Microbiomes of Rice Cultivars with High and Low Methane Emissions Reveals Differences in Abundance of Methanogenic Archaea and Putative Upstream Fermenters
    Research Article | Host-Microbe Biology
    Comparative Analysis of Root Microbiomes of Rice Cultivars with High and Low Methane Emissions Reveals Differences in Abundance of Methanogenic Archaea and Putative Upstream Fermenters

    Rice cultivation is a major source of anthropogenic emissions of methane, a greenhouse gas with a potentially severe impact on climate change. Emission variation between rice cultivars suggests the feasibility of breeding low-emission rice, but there is a limited understanding of how genotypes affect the microbiota involved in methane cycling. Here, we show that the root microbiome of the high-emitting cultivar is enriched both in...

    Zachary Liechty, Christian Santos-MedellĂ­n, Joseph Edwards, Bao Nguyen, David Mikhail, Shane Eason, Gregory Phillips, Venkatesan Sundaresan
  • Open Access
    Proteomes of <em>Lactobacillus delbrueckii</em> subsp. <em>bulgaricus</em> LBB.B5 Incubated in Milk at Optimal and Low Temperatures
    Research Article | Applied and Environmental Science
    Proteomes of Lactobacillus delbrueckii subsp. bulgaricus LBB.B5 Incubated in Milk at Optimal and Low Temperatures

    Lactobacillus delbrueckii subsp. bulgaricus has a long history of use in yogurt production. Although commonly cocultured with Streptococcus salivarius subsp. thermophilus in milk, fundamental knowledge of the adaptive responses of L. delbrueckii subsp. bulgaricus to the dairy environment and the consequences of those responses on the use of L. delbrueckii subsp. ...

    Xiaochen Yin, Michelle R. Salemi, Brett S. Phinney, Velitchka Gotcheva, Angel Angelov, Maria L. Marco
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