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chitin

  • Open Access
    Visualizing Microbial Community Dynamics via a Controllable Soil Environment
    Methods and Protocols | Applied and Environmental Science
    Visualizing Microbial Community Dynamics via a Controllable Soil Environment

    Microbial communities are key components of the soil ecosystem. Recent advances in metagenomics and other omics capabilities have expanded our ability to characterize the composition and function of the soil microbiome. However, characterizing the spatial metabolic and morphological diversity of microbial communities remains a challenge due to the dynamic and complex nature of soil microenvironments. The SoilBox system, demonstrated in...

    Arunima Bhattacharjee, Dusan Velickovic, Thomas W. Wietsma, Sheryl L. Bell, Janet K. Jansson, Kirsten S. Hofmockel, Christopher R. Anderton
  • Open Access
    Marine Chitinolytic <em>Pseudoalteromonas</em> Represents an Untapped Reservoir of Bioactive Potential
    Research Article | Applied and Environmental Science
    Marine Chitinolytic Pseudoalteromonas Represents an Untapped Reservoir of Bioactive Potential

    Infectious bacteria are developing and spreading resistance to conventional treatments at a rapid pace. To provide novel potent antimicrobials, we must develop new bioprospecting strategies. Here, we combined in silico and phenotypic approaches to explore the bioactive potential of the marine bacterial genus Pseudoalteromonas. We found that pigmented strains in particular represent an untapped resource of secondary...

    Sara Skøtt Paulsen, Mikael Lenz Strube, Pernille Kjersgaard Bech, Lone Gram, Eva C. Sonnenschein
  • Open Access
    Selection, Succession, and Stabilization of Soil Microbial Consortia
    Research Article | Ecological and Evolutionary Science
    Selection, Succession, and Stabilization of Soil Microbial Consortia

    The soil microbiome carries out important ecosystem functions, but interactions between soil microbial communities have been difficult to study due to the high microbial diversity and complexity of the soil habitat. In this study, we successfully obtained stable consortia with reduced complexity that contained species found in the original source soil. These consortia and the methods used to obtain them can be a valuable resource for...

    Elias K. Zegeye, Colin J. Brislawn, Yuliya Farris, Sarah J. Fansler, Kirsten S. Hofmockel, Janet K. Jansson, Aaron T. Wright, Emily B. Graham, Dan Naylor, Ryan S. McClure, Hans C. Bernstein
  • Open Access
    Growth on Chitin Impacts the Transcriptome and Metabolite Profiles of Antibiotic-Producing <span class="named-content genus-species" id="named-content-1">Vibrio coralliilyticus</span> S2052 and <span class="named-content genus-species" id="named-content-2">Photobacterium galatheae</span> S2753
    Editor's Pick Research Article | Applied and Environmental Science
    Growth on Chitin Impacts the Transcriptome and Metabolite Profiles of Antibiotic-Producing Vibrio coralliilyticus S2052 and Photobacterium galatheae S2753

    The bacterial family Vibrionaceae (vibrios) is considered a major player in the degradation of chitin, the most abundant polymer in the marine environment; however, the majority of studies on the topic have focused on a small number of Vibrio species. In this study, we analyzed the genomes of two vibrios to assess their genetic potential for the degradation of chitin. We then used transcriptomics and metabolomics to...

    Sonia Giubergia, Christopher Phippen, Kristian Fog Nielsen, Lone Gram
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