TABLE 2

Summary of sequence data sets analyzed with the MAG pipelinea

EnvironmentNCBI SRA
accession no.
Total no.
of readsb
No. of high-
quality basesb
General notescReference
Ocean surface waterERR5990293.372 × 1083.340 × 1010Caribbean Sea
(5 mbsl)
15
Estuary sedimentSRR52481641.137 × 1081.589 × 1010Sulfate zone
(8-10 cmbsf)
4
Maize soilSRR3514734.727 × 1083.824 × 1010Surface soil16
Human gutSRR51276315.095 × 1084.847 × 10917
  • a The sequencing platform used for sequence data sets from all the environments shown was Illumina HiSeq 2000.

  • b Combined forward and reverse paired-end reads.

  • c mbsl, meters below sea level; cmbsf, centimeters below sea floor.