TABLE 1

Read statistics for the different sequenced RNA samples matched to the reference type 3 pneumococcus sequence OXC141 or to the murine genomea

Sample by count typeTotal no. of readsNo. of paired reads alignedNo. of single reads alignedTotal no. of aligned reads% reads aligned
Bacterial
    Broth 161,987,15444,551,2645,247,43049,798,69480.4
    Broth 257,882,67631,983,7824,008,13535,991,91762.0
    Broth 315,145,01610,084,8542,137,23612,222,09080.3
    BALF 146,267,2807,0984,79811,896<0.1
    BALF 260,494,6086,061,080702,1596,763,23911.2
    BALF 358,380,798102,32616,771119,0970.2
    Pleura 157,787,368272,95641,306314,2620.5
    Pleura 2166,408,8462,941,674344,9233,286,5972.0
    Pleura 362,976,26282,60431,310113,9140.18
Murine
    BALF 146,267,28023,216,3702,728,00525,944,37556.1
    BALF 260,494,60826,797,2943,392,36830,189,66250.0
    BALF 358,380,79828,988,5503,704,16832,692,71856.0
    Pleura 157,787,36828,491,0105,585,63734,076,64759.0
    Pleura 2166,408,84687,343,50410,292,66397,636,16758.7
    Pleura 362,976,26234,412,6246,047,74040,460,36664.2
  • a Reads were mapped to gene regions only.