TABLE 2

Thirteen component networks of KlebNeta

CodeDescriptionNo. of
genes
No. of
links
KP-CCInferred links by cocitation across PubMed Central articles for K. pneumoniae biology5045,505
KP-DPInferred links by correlation of protein domain profiles of K. pneumoniae coding genes3,47017,402
KP-GNInferred links by neighborhood of K. pneumoniae orthologs in bacterial genomes4,53394,499
KP-PGPhylogenetic profiling and coinheritance patterns of K. pneumoniae ortholog genes across organisms2,49244,496
EC-CCAssocialogs of inferred links by cocitation across PubMed Central articles for E. coli biology1,64130,464
EC-CXAssocialogs of inferred links by coexpression across gene expression profiles in the GEO database for E. coli2,94642,489
EC-LCAssocialogs of bacterial protein-protein interactions derived from literature curation of small-scale analysis for E. coli646840
PA-CCAssocialogs of inferred links by cocitation across PubMed Central articles for P. aeruginosa biology1,18712,181
PA-CXAssocialogs of inferred links by coexpression across gene expression profiles in the GEO database for P. aeruginosa1,4336,356
SC-CCAssocialogs of inferred links by cocitation across PubMed Central articles for S. cerevisiae biology4954,294
SC-CXAssocialogs of inferred links by coexpression across gene expression profiles in the GEO database for S. cerevisiae6309,513
SC-LCAssocialogs of bacterial PPI derived from literature curation of small-scale analysis for S. cerevisiae435896
BA-HTAssocialogs of bacterial PPI derived from high-throughput data of E. coli, S. aureus, and M. pneumoniae2,41523,493
KlebNetIntegrated network4,674160,450
  • a KP, K. pneumoniae; EC, E. coli; PA, P. aeruginosa; SC, S. cerevisiae; BA, multiple bacterial species; CC, cocitation; DP, domain profile; GN, gene neighborhood; PG, phylogenetic profiles; CX, coexpression; LC, literature-curated protein-protein interactions; HT, high-throughput protein-protein interactions.