TABLE 1 

Empirical runtime and memory footprint of typical SEPP runsa

QIITA
ID
No. of
sOTUs
No. of
samples
sOTU
length (nt)
Memory (GB)
(max RSS)
Time
(h:min)
Wall time
(h:min)
102421,47334415010.206:3201:54
1031531,78419915010.209:3502:47
1034314,24538915010.306:1001:45
10346108,4471,29210010.420:5906:07
104224,70264715010.401:3700:31
201423,0291,01715010.208:4502:27
213629,70250415010.408:4802:33
55027,7911,96710010.405:4901:43
85011,3015289010.202:0700:40
MrOS472759924910.302:4400:48
  • a We ran SEPP on 4/32 cores of an Intel Xeon CPU E5-2640 v3 @ 2.6-GHz server with 265 GB of available RAM. With an ~10-GB memory requirement, SEPP is usable on currently available workstations or laptops. ID, identifier; Time, accumulated “user time"; max RSS, maximum resident set size.