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Research Article | Novel Systems Biology Techniques

Nonpareil 3: Fast Estimation of Metagenomic Coverage and Sequence Diversity

Luis M. Rodriguez-R, Santosh Gunturu, James M. Tiedje, James R. Cole, Konstantinos T. Konstantinidis
Anthony Fodor, Editor
Luis M. Rodriguez-R
aSchool of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, Georgia, USA
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  • ORCID record for Luis M. Rodriguez-R
Santosh Gunturu
cCenter for Microbial Ecology, Michigan State University, East Lansing, Michigan, USA
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James M. Tiedje
cCenter for Microbial Ecology, Michigan State University, East Lansing, Michigan, USA
dDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, USA
eDepartment of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, Michigan, USA
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James R. Cole
cCenter for Microbial Ecology, Michigan State University, East Lansing, Michigan, USA
eDepartment of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, Michigan, USA
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Konstantinos T. Konstantinidis
aSchool of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, Georgia, USA
bSchool of the Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia, USA
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Anthony Fodor
University of North Carolina at Charlotte
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DOI: 10.1128/mSystems.00039-18
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Article Information

DOI 
https://doi.org/10.1128/mSystems.00039-18

Published By 
American Society for Microbiology Journals
History 
  • Received March 22, 2018
  • Accepted March 23, 2018
  • Published online April 10, 2018.

Copyright & Usage 
Copyright © 2018 Rodriguez-R et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.
Editors and / or Reviewers 
  • Anthony Fodor, Editor, University of North Carolina at Charlotte

Author Information

  1. Luis M. Rodriguez-Ra,
  2. Santosh Gunturuc,
  3. James M. Tiedjec,d,e,
  4. James R. Colec,e and
  5. Konstantinos T. Konstantinidisa,b
  1. aSchool of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, Georgia, USA
  2. bSchool of the Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia, USA
  3. cCenter for Microbial Ecology, Michigan State University, East Lansing, Michigan, USA
  4. dDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, USA
  5. eDepartment of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, Michigan, USA
  • Address correspondence to Konstantinos T. Konstantinidis, kostas{at}ce.gatech.edu.
  • L.M.R. and S.G. contributed equally to this work.

  • Citation Rodriguez-R LM, Gunturu S, Tiedje JM, Cole JR, Konstantinidis KT. 2018. Nonpareil 3: fast estimation of metagenomic coverage and sequence diversity. mSystems 3:e00039-18. https://doi.org/10.1128/mSystems.00039-18.

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Nonpareil 3: Fast Estimation of Metagenomic Coverage and Sequence Diversity
Luis M. Rodriguez-R, Santosh Gunturu, James M. Tiedje, James R. Cole, Konstantinos T. Konstantinidis
mSystems Apr 2018, 3 (3) e00039-18; DOI: 10.1128/mSystems.00039-18

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Nonpareil 3: Fast Estimation of Metagenomic Coverage and Sequence Diversity
Luis M. Rodriguez-R, Santosh Gunturu, James M. Tiedje, James R. Cole, Konstantinos T. Konstantinidis
mSystems Apr 2018, 3 (3) e00039-18; DOI: 10.1128/mSystems.00039-18
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KEYWORDS

bioinformatics
coverage
metagenomics
microbial ecology

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