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Editor's Pick Research Article | Novel Systems Biology Techniques

Spatial Molecular Architecture of the Microbial Community of a Peltigera Lichen

Neha Garg, Yi Zeng, Anna Edlund, Alexey V. Melnik, Laura M. Sanchez, Hosein Mohimani, Alexey Gurevich, Vivian Miao, Stefan Schiffler, Yan Wei Lim, Tal Luzzatto-Knaan, Shengxin Cai, Forest Rohwer, Pavel A. Pevzner, Robert H. Cichewicz, Theodore Alexandrov, Pieter C. Dorrestein
Janet K. Jansson, Editor
Neha Garg
aSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, California, USA
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Yi Zeng
bDepartment of Chemistry and Biochemistry, University of California, San Diego, California, USA
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Anna Edlund
cGenomic Medicine, J. Craig Venter Institute, La Jolla, California, USA
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Alexey V. Melnik
aSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, California, USA
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Laura M. Sanchez
aSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, California, USA
dDepartment of Medicinal Chemistry and Pharmacognosy, College of Pharmacy, University of Illinois at Chicago, Chicago, Illinois, USA
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  • ORCID record for Laura M. Sanchez
Hosein Mohimani
kDepartment of Computer Science and Engineering, University of California San Diego, La Jolla, California, USA
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Alexey Gurevich
lCenter for Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, Russia
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Vivian Miao
eDepartment of Microbiology and Immunology, University of British Columbia, Vancouver, Canada
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Stefan Schiffler
fSCiLS GmbH, Bremen, Germany
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Yan Wei Lim
gDepartment of Biology, San Diego State University, San Diego, California, USA
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Tal Luzzatto-Knaan
aSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, California, USA
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Shengxin Cai
hNatural Products Discovery Group, Department of Chemistry and Biochemistry, Institute for Natural Products Applications and Research Technologies, Stephenson Life Sciences Research Center, University of Oklahoma, Norman, Oklahoma, USA
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Forest Rohwer
gDepartment of Biology, San Diego State University, San Diego, California, USA
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Pavel A. Pevzner
kDepartment of Computer Science and Engineering, University of California San Diego, La Jolla, California, USA
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Robert H. Cichewicz
hNatural Products Discovery Group, Department of Chemistry and Biochemistry, Institute for Natural Products Applications and Research Technologies, Stephenson Life Sciences Research Center, University of Oklahoma, Norman, Oklahoma, USA
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Theodore Alexandrov
aSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, California, USA
fSCiLS GmbH, Bremen, Germany
iEuropean Molecular Biology Laboratory (EMBL), Heidelberg, Germany
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Pieter C. Dorrestein
aSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, California, USA
bDepartment of Chemistry and Biochemistry, University of California, San Diego, California, USA
jCenter for Computational Mass Spectrometry and Department of Computer Science and Engineering, University of California San Diego, La Jolla, California, USA
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Janet K. Jansson
Pacific Northwest National Laboratory
Roles: Editor
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DOI: 10.1128/mSystems.00139-16
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Article Information

DOI 
https://doi.org/10.1128/mSystems.00139-16
PubMed 
28028548

Published By 
American Society for Microbiology Journals
History 
  • Received September 22, 2016
  • Accepted November 17, 2016
  • Published online December 20, 2016.

Copyright & Usage 
Copyright © 2016 Garg et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license .
Editors and / or Reviewers 
  • Janet K. Jansson, Editor, Pacific Northwest National Laboratory

Author Information

  1. Neha Garga,
  2. Yi Zengb,
  3. Anna Edlundc,
  4. Alexey V. Melnika,
  5. Laura M. Sancheza,d,
  6. Hosein Mohimanik,
  7. Alexey Gurevichl,
  8. Vivian Miaoe,
  9. Stefan Schifflerf,
  10. Yan Wei Limg,
  11. Tal Luzzatto-Knaana,
  12. Shengxin Caih,
  13. Forest Rohwerg,
  14. Pavel A. Pevznerk,
  15. Robert H. Cichewiczh,
  16. Theodore Alexandrova,f,i and
  17. Pieter C. Dorresteina,b,j
  1. aSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, California, USA
  2. bDepartment of Chemistry and Biochemistry, University of California, San Diego, California, USA
  3. cGenomic Medicine, J. Craig Venter Institute, La Jolla, California, USA
  4. dDepartment of Medicinal Chemistry and Pharmacognosy, College of Pharmacy, University of Illinois at Chicago, Chicago, Illinois, USA
  5. eDepartment of Microbiology and Immunology, University of British Columbia, Vancouver, Canada
  6. fSCiLS GmbH, Bremen, Germany
  7. gDepartment of Biology, San Diego State University, San Diego, California, USA
  8. hNatural Products Discovery Group, Department of Chemistry and Biochemistry, Institute for Natural Products Applications and Research Technologies, Stephenson Life Sciences Research Center, University of Oklahoma, Norman, Oklahoma, USA
  9. iEuropean Molecular Biology Laboratory (EMBL), Heidelberg, Germany
  10. jCenter for Computational Mass Spectrometry and Department of Computer Science and Engineering, University of California San Diego, La Jolla, California, USA
  11. kDepartment of Computer Science and Engineering, University of California San Diego, La Jolla, California, USA
  12. lCenter for Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, Russia
  • Address correspondence to Pieter C. Dorrestein, pdorrestein{at}ucsd.edu.
  • N.G. and Y.Z. are co-first authors.

  • Citation Garg N, Zeng Y, Edlund A, Melnik AV, Sanchez LM, Mohimani H, Gurevich A, Miao V, Schiffler S, Lim YW, Luzzatto-Knaan T, Cai S, Rohwer F, Pevzner PA, Cichewicz RH, Alexandrov T, Dorrestein PC. 2016. Spatial molecular architecture of the microbial community of a Peltigera lichen. mSystems 1(6):e00139-16. doi:10.1128/mSystems.00139-16 .

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Spatial Molecular Architecture of the Microbial Community of a Peltigera Lichen
Neha Garg, Yi Zeng, Anna Edlund, Alexey V. Melnik, Laura M. Sanchez, Hosein Mohimani, Alexey Gurevich, Vivian Miao, Stefan Schiffler, Yan Wei Lim, Tal Luzzatto-Knaan, Shengxin Cai, Forest Rohwer, Pavel A. Pevzner, Robert H. Cichewicz, Theodore Alexandrov, Pieter C. Dorrestein
mSystems Dec 2016, 1 (6) e00139-16; DOI: 10.1128/mSystems.00139-16

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Spatial Molecular Architecture of the Microbial Community of a Peltigera Lichen
Neha Garg, Yi Zeng, Anna Edlund, Alexey V. Melnik, Laura M. Sanchez, Hosein Mohimani, Alexey Gurevich, Vivian Miao, Stefan Schiffler, Yan Wei Lim, Tal Luzzatto-Knaan, Shengxin Cai, Forest Rohwer, Pavel A. Pevzner, Robert H. Cichewicz, Theodore Alexandrov, Pieter C. Dorrestein
mSystems Dec 2016, 1 (6) e00139-16; DOI: 10.1128/mSystems.00139-16
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KEYWORDS

lichen
mass spectrometry
microbial assemblages
natural products
metagenomics

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