TABLE 1 

Summary of omics data sets included in the Listeriomics database

CategoryData sizesData type(s)Tools available
Genomics83 complete genomes (NCBI), all protein coding genes and noncoding RNAs, 304 small RNAsGenome, phylogeny, genome elements, homologsGenome summary, gene panel, small RNA panel, genome viewer
Transcriptomics362 biological conditions, 8 Listeria strains, 342 comparisonsGene expression array, tiling array, TSS, RNA-SeqTranscriptome summary, expression atlas, heat map, genome viewer
Proteomics74 biological conditions, 4 Listeria strains, 28 comparisonsMass spectrometryProteome summary, protein atlas, heat map, genome viewer