TABLE 2 

Strain information for the sequence data used in the phylogenetic analysis of TLPQC loci in this study

SpeciesStrain or plasmidAccession no.TLPQCaLocation
Achromobacter xylosoxidansFDAARGOS_162CP0140651Chromosome
MN001CP0120461Chromosome
Alicycliphilus denitrificansK601CP0026571Chromosome
Burkholderia multivoransATCC 17616CP0008681Chromosome
Burkholderia multivorans chromosome 1ATCC BAA-247CP0098321Chromosome
Cupriavidus gilardii chromosome 1CR3CP0105161Chromosome
Dechlorosoma suillumPSCP0031531Chromosome
Desulfovibrio alaskensisG20CP0001121Chromosome
Klebsiella pneumoniaeJ1 plasmid 1CP0137121Plasmid
Marinobacter aquaeoleiVT8CP0005141Chromosome
Methylobacillus flagellatusKTCP0002841Chromosome
Pandoraea apistaAU2161CP0115011Chromosome
DSM 16535CP0134811Chromosome
TF80G25CP0112791Chromosome
TF81F4CP0105181Chromosome
Pantoea sp.PSNIH2CP0098661Chromosome
Pseudomonas aeruginosaATCC 27853CP0151171Chromosome
F30658CP0088571Chromosome
F9670CP0088731Chromosome
PA38182HG5300681Chromosome
S04 90CP0113691Chromosome
S86968CP0088651Chromosome
T38079CP0088661Chromosome
W36662CP0088701Chromosome
W45909CP0088711Chromosome
W60856CP0088641Chromosome
Carb01 63CP0113171Chromosome
Pseudomonas balearicaDSM 6083CP0075111Chromosome
Pseudomonas pseudoalcaligenesCECT 5344HG9168261Chromosome
Pseudomonas resinovoransNBRC 106553AP0130681Chromosome
Pseudomonas sp.VLB120CP0039611Chromosome
Pseudomonas stutzeriCGMCC 1.1803CP0028811Chromosome
DSM 4166CP0026221Chromosome
Ralstonia mannitolilytica chromosome 1SN82F48CP0107991Chromosome
Ralstonia pickettii chromosome 112DCP0016441Chromosome
DTP0602CP0066671Chromosome
Salmonella enterica SenftenbergpSSE ATCC-43845CP0168381Plasmid
Vibrio parahaemolyticus chromosome 1UCM-V493CP0070041Chromosome
Cronobacter malonaticusLMG 23826CP0139402Chromosome
CMCC 45402CP0067312Chromosome
Cronobacter sakazakiiATCC 29544CP0110472Chromosome
Enterobacter asburiaeCAV1043 pCAV1043-51CP0115872Plasmid
Enterobacter cloacaeECNIH5 pENT-22eCP0098552Plasmid
ECR091 pENT-4bdCP0089072Plasmid
Escherichia coliP12bCP0022912Chromosome
Klebsiella oxytocapKO_JKo3_1 DNAAP0149522Plasmid
Klebsiella pneumoniaeCAV1193 pCAV1193-258CP0133232Plasmid
CAV1344 pCAV1344-250CP0116232Plasmid
KPNIH39 pKPN-332CP0147632Plasmid
pKPN_CZJX4244242Plasmid
Klebsiella pneumoniae subsp. pneumoniaeKPNIH27 pKPN-262CP0077342Plasmid
Obesumbacterium proteusDSM 2777CP0146082Chromosome
Salmonella enterica HavanaCFSAN024771JWQI01000019.12Unknown
Salmonella enterica SenftenbergpSSE ATCC-43845CP0168382Plasmid
Yersinia enterocolitica(Type O:5) YE53/03HF5719882Chromosome
FORC-002CP0094562Chromosome
Cronobacter sakazakiiSP291CP0040913Chromosome
NCTC 8155CP0122533Chromosome
Enterobacter asburiaeCAV1043CP0115913Chromosome
Enterobacter cloacae complex chromosome 135734CP0121623Chromosome
Enterobacter cloacae subsp. cloacaeATCC 13047CP0019183Chromosome
Klebsiella pneumoniae207M1D0 KPN207_p3LT2164393Plasmid
30660/NJST258_1 pNJST258N1CP0069273Plasmid
32192pCP0105743Plasmid
34618 p34618CP0103933Plasmid
500_1420 p500_1420CP0119813Plasmid
BK32179 pBK32179JX4304483Plasmid
CAV1392 pCAV1392-131CP0115773Plasmid
DMC1097 pDMC1097CP0119773Plasmid
JM45 p1CP0066573Plasmid
KP-1 pKP1-19CP0128843Plasmid
KpN01 pKpN01-SILCP0129893Plasmid
KpN06 pKpN06-SILCP0129943Plasmid
Kpn555 pKPN-d90CP0151323Plasmid
KPNIH36 pKPN-fffCP0146493Plasmid
O6CO7 pIT-6C07LT0096883Plasmid
pKN-LS6JX4429743Plasmid
pKp848CTXLM9947173Plasmid
Plasmid 1CP0158233Plasmid
PMK1 PMK1-ACP0089303Plasmid
pUUH239.2CP0024743Plasmid
ST15 pKP02022KF7199723Plasmid
ST23 pKP007KF7199713Plasmid
ST258 pKPN-ITJN2337043Plasmid
ST48 pKP09085KF7199703Plasmid
U25 PU25001KT2032863Plasmid
UHKPC07 pUHKPC07CP0119873Plasmid
UHKPC33 pUHKPC33CP0119903Plasmid
Klebsiella pneumoniae subsp. pneumoniaeKPNIH10 pKPN-498CP0077293Plasmid
KPNIH24 pKPN-e44CP0088003Plasmid
KPNIH32 pKPN-a68CP0097773Plasmid
KPX pKPX-1AP0120553Plasmid
MGH 78578 pKPN3CP0006483Plasmid
  • a The TLPQC-1, TLPQC-2, and TLPQC-3 loci are indicated by 1, 2, and 3, respectively, in the table.